diff --git a/appveyor.yml b/appveyor.yml
index 485732a9..986601a2 100644
--- a/appveyor.yml
+++ b/appveyor.yml
@@ -26,7 +26,7 @@ before_build:
   # Indirection because appveyor doesn't handle multiline batch scripts properly
   # https://stackoverflow.com/questions/37627248/how-to-split-a-command-over-multiple-lines-in-appveyor-yml/37647169#37647169
   # https://help.appveyor.com/discussions/questions/3888-multi-line-cmd-or-powershell-warning-ignore
-  - cmd: .\misc\appveyorBuildConfigurationScript.bat
+  - cmd: .\tools\misc\appveyorBuildConfigurationScript.bat
 
 
 # build with MSBuild
@@ -37,7 +37,7 @@ build:
 
 test_script:
   - set CTEST_OUTPUT_ON_FAILURE=1
-  - cmd: .\misc\appveyorTestRunScript.bat
+  - cmd: .\tools\misc\appveyorTestRunScript.bat
 
 
 # Sadly we cannot use the standard "dimensions" based approach towards
diff --git a/tools/misc/appveyorBuildConfigurationScript.bat b/tools/misc/appveyorBuildConfigurationScript.bat
index 5933da38..602f1fd3 100644
--- a/tools/misc/appveyorBuildConfigurationScript.bat
+++ b/tools/misc/appveyorBuildConfigurationScript.bat
@@ -13,7 +13,6 @@ if "%CONFIGURATION%"=="Debug" (
     cmake -H. -BBuild -A%PLATFORM% -DUSE_WMAIN=%wmain% -DMEMORYCHECK_COMMAND=build-misc\Debug\CoverageHelper.exe -DMEMORYCHECK_COMMAND_OPTIONS=--sep-- -DMEMORYCHECK_TYPE=Valgrind || exit /b !ERRORLEVEL! || exit /b !ERRORLEVEL!
   ) else (
     @REM # We know that coverage is 0
-    python scripts\generateSingleHeader.py || exit /b !ERRORLEVEL!
     cmake -H. -BBuild -A%PLATFORM% -DUSE_WMAIN=%wmain% -DCATCH_BUILD_EXAMPLES=%examples% -DCATCH_BUILD_EXTRA_TESTS=%examples% || exit /b !ERRORLEVEL!
   )
 )
diff --git a/tools/misc/appveyorMergeCoverageScript.py b/tools/misc/appveyorMergeCoverageScript.py
index 93a47fff..7cf408d2 100644
--- a/tools/misc/appveyorMergeCoverageScript.py
+++ b/tools/misc/appveyorMergeCoverageScript.py
@@ -4,6 +4,6 @@ import glob
 import subprocess
 
 if __name__ == '__main__':
-    cov_files = list(glob.glob('projects/cov-report*.bin'))
+    cov_files = list(glob.glob('tests/cov-report*.bin'))
     base_cmd = ['OpenCppCoverage', '--quiet', '--export_type=cobertura:cobertura.xml'] + ['--input_coverage={}'.format(f) for f in cov_files]
     subprocess.check_call(base_cmd)